Papers, Talks and Conferences
Papers (Most recent first)
- T. Wood, C.A. Yates, D. Wilkinson and G. Rosser (2011). "Visual tracking of bacteria using the Gaussian Mixture Probability Hypothesis Density Filter". IEEE Transactions on Circuits and Systems for Video Technology. Accepted.
- C.A. Yates and K. Burrage (2011). "Look before you leap: A confidence-based method for selecting species criticality whilst avoiding negative populations in τ-leaping". Journal of Chemical Physics (JCP) 134, 084109.
- C.A. Yates, R. Baker, R. Erban and P.K. Maini (2011). "Refining self-propelled particle models for collective behaviour". Canadian Applied Math Quarterly (CAMQ) 18(3).
- C. Escudero, C.A. Yates, J. Buhl, I.D. Couzin, R. Erban, I.G. Kevrekidis (2010). "Ergodic directional switching in mobile insect groups". Physical Review E 82(1) 11926.
- R.E. Baker, C.A. Yates and R. Erban (2009). "From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains". Bulletin of Mathematical Biology 72(3) 719-762.
- C.A. Yates, R. Erban, C. Escudero, I. Couzin, J. Buhl, I. Kevrekidis, P. Maini and D. Sumpter, (2009).
"Inherent noise can facilitate coherence in collective swarm motion". Proceedings of the
National Academy of Sciences (PNAS) 106(14) 5464-5469.
Supplementary material to accompany this paper can be found here .
Papers submitted and in preparation
- C.A. Yates, R.E. Baker, R. Erban, and P.K. Maini (2011). "Going from microscopic to macroscopic on non-uniform growing domains." Physica A (Physica A). Submitted.
- G. Rosser, C.A. Yates, T. Wood and D. Wilkinson (2011). "Analysing free-swimming bacterial motion". In preparation.
- C.A. Yates, G. Klingbeil and R. Erban and R.E. Baker (2011). "Efficient Stochastic Simulations Algorithms" (In preparation).
- C.A. Yates (2011). "An isotropic model for domain growth on a regular lattice". (In preparation).
Selected press coverage for "Ergodic directional switching in mobile insect groups"
Physical Review FocusScience News
Selected press coverage for "Inherent noise can facilitate coherence in collective swarm motion"
Oxford Science BlogOxford Today
CSIC-Consejo Superior de Investigaciones Cientificas (Spain)
Patents
Trevor Wood and I currently have a patent pending on bacterial tracking software (application no. 1004488.1). For more details on this work please see my research page.Talks
10-2010 Invited Speaker at the Math-Bio-Medicine (MBM) seminars series, University of Leeds. "United by noise: Randomness helps swarms stay together".
09-2010 Invited speaker at Culham Science Centre (home of UK's fusion research programme, and JET). "United by noise: Randomness helps swarms stay together".
06-2010 Invited speaker at the Fourth annual Systems Biology Inter-DTC Conference (University of Warwick Systems Biology Centre) "A comparison of stochastic and analytical models for cell migration".
04-2010 Invited speaker at the Manchester SIAM student chapter conference "Comparing Stochastic and Continuum Models For Cell Migration".
11/2009 - Junior Applied Mathematics Seminar " A comparison of stochastic and analytical models for cell migration".
10/2009 - Departmental Transfer of Status talk " A comparison of stochastic and analytical models for cell migration".
06/2009 - Invited speaker at the third annual Systems Biology Inter-DTC Conference (University of Manchester Systems Biology Centre) "A comparison of stochastic and analytical models for cell migration during early embryo somitogenesis.*"
05/2009 - Invited speaker at Princeton University Department of Engineering: "United by noise: Randomness helps swarms stay together*".
05/2009 - Mini-symposium speaker at the SIAM Conference on Applications of Dynamical Systems, Snowbird, Utah: "United by noise: Randomness helps swarms stay together*".
02/2009 - Invited speaker at the 2nd Annual Oxford SIAM Student Chapter Conference: "United by noise: Randomness helps swarms stay together".
10/2008 - Junior Applied Mathematics Seminar "Locust Pocus: How Does Randomness Help Swarms Stay Together".
*These talks were created using LaTeX's presentation document class, beamer and contain movies. The movies cannot be played in Linux and require the correct media player on other operating systems (although the rest of the talk will function perfectly well in Linux).
Peer Reviewing Duties
PLOS Computational Biology - Reviewer.Physical Reveiw Letters (PRL) - Reviewer.
Physical Reveiw E (PRE) - Reviewer.
Journal of Theoretical Biology (JTB)- Reviewer.
Bulletin of Mathematical Biology (BMB) - Reviewer.
Physica A - Reviewer.
Journal of Mathematical Biology (JMB) - Reviewer.
AFOSR - Air Force Office of Scientific Research (AFOSR, USA) - Grant Reviewer.
Other Conferences Attended
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03/2011 - Workshop on insect self-organization and swarming.
Mathematical Biosciences Institute, Columbus, Ohio.
04/2010 - Workshop on Nonlinear PDEs arising in mathematical biology: cell migration and tissue mechanics. International Centre for Mathamtical Sciences, Edinburgh.
05/2009 - SIAM Conference on Applications of Dynamical Systems, Snowbird, Utah
04/2009 - Graduate School: Nonlinear and Stochastic Systems in Biology. University of Leeds, UK.
02/2009 - 2nd Annual Oxford SIAM Student Chapter Conference. University of Oxford, UK.
04/2008 - Workshop on Modelling Complex Biological Systems. University of Uppsala, Sweeden.
03/2008 - Oxford Centre for Integrative Systems Biology Launch Meeting. University of Oxford, UK.